1. Motivation | 2. Using the 2bit C library in the C code of your package | Find the header files | Compile and link against the library | Notes | 3. R functions defined in Rtwobitlib
Package: Rtwobitlib 0.3.10
Rtwobitlib: '2bit' 'C' Library
A trimmed down copy of the "kent-core source tree" turned into a 'C' library for manipulation of '.2bit' files. See <https://genome.ucsc.edu/FAQ/FAQformat.html#format7> for a quick overview of the '2bit' format. The "kent-core source tree" can be found here: <https://github.com/ucscGenomeBrowser/kent-core/>. Only the '.c' and '.h' files from the source tree that are related to manipulation of '.2bit' files were kept. Note that the package is primarily useful to developers of other R packages who wish to use the '2bit' 'C' library in their own 'C'/'C++' code.
Authors:
Rtwobitlib_0.3.10.tar.gz
Rtwobitlib_0.3.10.zip(r-4.7-x86_64)Rtwobitlib_0.3.10.zip(r-4.7-arm64)Rtwobitlib_0.3.10.zip(r-4.6-x86_64)Rtwobitlib_0.3.10.zip(r-4.6-arm64)Rtwobitlib_0.3.10.zip(r-4.5-x86_64)
Rtwobitlib_0.3.10.tgz(r-4.6-x86_64)Rtwobitlib_0.3.10.tgz(r-4.6-arm64)Rtwobitlib_0.3.10.tgz(r-4.5-x86_64)Rtwobitlib_0.3.10.tgz(r-4.5-arm64)
Rtwobitlib_0.3.10.tar.gz(r-4.7-arm64)Rtwobitlib_0.3.10.tar.gz(r-4.7-x86_64)Rtwobitlib_0.3.10.tar.gz(r-4.6-arm64)Rtwobitlib_0.3.10.tar.gz(r-4.6-x86_64)
Rtwobitlib_0.3.10.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
Rtwobitlib/json (API)
| # Install 'Rtwobitlib' in R: |
| install.packages('Rtwobitlib', repos = c('https://hpages.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/hpages/rtwobitlib/issues
Last updated from:6cc5aa293d. Checks:15 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 90 | ||
| linux-devel-x86_64 | OK | 123 | ||
| source / vignettes | OK | 181 | ||
| linux-release-arm64 | OK | 96 | ||
| linux-release-x86_64 | OK | 143 | ||
| macos-release-arm64 | OK | 96 | ||
| macos-release-x86_64 | OK | 256 | ||
| macos-oldrel-arm64 | OK | 86 | ||
| macos-oldrel-x86_64 | OK | 286 | ||
| windows-devel-arm64 | OK | 342 | ||
| windows-devel-x86_64 | OK | 123 | ||
| windows-release-arm64 | OK | 347 | ||
| windows-release-x86_64 | OK | 87 | ||
| windows-oldrel-x86_64 | OK | 102 | ||
| wasm-release | OK | 82 |
Exports:pkgconfigtwobit_readtwobit_seqlengthstwobit_seqstatstwobit_write
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Compiler configuration arguments for use of Rtwobitlib | pkgconfig |
| Read/write a .2bit file | twobit_read twobit_write |
| Extract sequence lengths and letter counts from a .2bit file | twobit_seqlengths twobit_seqstats |