1. Biostrings::BLOSUM100
    Predefined scoring matrices
    csv| json| rda| rds
    moved_to_pwalign_pkg|24 x 24
  2. Biostrings::BLOSUM45
    Predefined scoring matrices
    csv| json| rda| rds
    moved_to_pwalign_pkg|25 x 25
  3. Biostrings::BLOSUM50
    Predefined scoring matrices
    csv| json| rda| rds
    moved_to_pwalign_pkg|24 x 24
  4. Biostrings::BLOSUM62
    Predefined scoring matrices
    csv| json| rda| rds
    moved_to_pwalign_pkg|25 x 25
  5. Biostrings::BLOSUM80
    Predefined scoring matrices
    csv| json| rda| rds
    moved_to_pwalign_pkg|25 x 25
  6. Biostrings::HNF4alpha
    Known HNF4alpha binding sequences
    rda| rds
    DNAStringSet
  7. Biostrings::PAM120
    Predefined scoring matrices
    csv| json| rda| rds
    moved_to_pwalign_pkg|24 x 24
  8. Biostrings::PAM250
    Predefined scoring matrices
    csv| json| rda| rds
    moved_to_pwalign_pkg|24 x 24
  9. Biostrings::PAM30
    Predefined scoring matrices
    csv| json| rda| rds
    moved_to_pwalign_pkg|25 x 25
  10. Biostrings::PAM40
    Predefined scoring matrices
    csv| json| rda| rds
    moved_to_pwalign_pkg|24 x 24
  11. Biostrings::PAM70
    Predefined scoring matrices
    csv| json| rda| rds
    moved_to_pwalign_pkg|25 x 25
  12. Biostrings::yeastSEQCHR1
    An annotation data file for CHR1 in the yeastSEQ package
    json| rda| rds
    character
  13. pwalign::BLOSUM100
    Predefined scoring matrices
    csv| json| rda| rds
    matrix|24 x 24
  14. pwalign::BLOSUM45
    Predefined scoring matrices
    csv| json| rda| rds
    matrix|25 x 25
  15. pwalign::BLOSUM50
    Predefined scoring matrices
    csv| json| rda| rds
    matrix|24 x 24
  16. pwalign::BLOSUM62
    Predefined scoring matrices
    csv| json| rda| rds
    matrix|25 x 25
  17. pwalign::BLOSUM80
    Predefined scoring matrices
    csv| json| rda| rds
    matrix|25 x 25
  18. pwalign::PAM120
    Predefined scoring matrices
    csv| json| rda| rds
    matrix|24 x 24
  19. pwalign::PAM250
    Predefined scoring matrices
    csv| json| rda| rds
    matrix|24 x 24
  20. pwalign::PAM30
    Predefined scoring matrices
    csv| json| rda| rds
    matrix|25 x 25
  21. pwalign::PAM40
    Predefined scoring matrices
    csv| json| rda| rds
    matrix|24 x 24
  22. pwalign::PAM70
    Predefined scoring matrices
    csv| json| rda| rds
    matrix|25 x 25
  23. pwalign::phiX174Phage
    Versions of bacteriophage phiX174 complete genome and sample short reads
    rda| rds
    DNAStringSet
  24. pwalign::quPhiX174
    Versions of bacteriophage phiX174 complete genome and sample short reads
    rda| rds
    BStringSet
  25. pwalign::srPhiX174
    Versions of bacteriophage phiX174 complete genome and sample short reads
    rda| rds
    DNAStringSet
  26. pwalign::wtPhiX174
    Versions of bacteriophage phiX174 complete genome and sample short reads
    json| rda| rds
    integer