igblastr overviewUpdated 16 hours ago

Hervé Pagès, Kellie MacPhee, Ollivier Hyrien

Rendered from igblastr_overview.Rmd in igblastr 1.3.6.
MultipleAlignment ObjectsUpdated 1 months ago

Marc Carlson, Beryl Kanali

Rendered from MultipleAlignments.Rmd in MultipleAlignment 0.99.1.
GenomicRanges HOWTOs Updated 2 months ago

Hervé Pagès

Rendered from GenomicRangesHOWTOs.Rnw in GenomicRanges 1.65.0.
ZarrArray overviewUpdated 2 months ago

Hervé Pagès

Rendered from ZarrArray_overview.Rmd in ZarrArray 1.1.0.
Splicing graphs and RNA-seq dataUpdated 7 months ago

H. Pagès

Rendered from SplicingGraphs.Rnw in SplicingGraphs 1.53.0.
The cigarillo packageUpdated 9 months ago

Hervé Pagès

Rendered from cigarillo.Rmd in cigarillo 1.3.0.
A quick overview of the S4 class systemUpdated 9 months ago

Hervé Pagès

Rendered from S4QuickOverview.Rmd in S4Vectors 0.51.3.
GenomeInfoDb: Introduction to GenomeInfoDbUpdated 12 months ago

Hervé Pagès

Rendered from GenomeInfoDb.Rnw in GenomeInfoDb 1.49.1.
The Seqinfo packageUpdated 1 years ago

Hervé Pagès

Rendered from Seqinfo.Rmd in Seqinfo 1.3.0.
MultipleAlignment ObjectsUpdated 1 years ago

Marc Carlson, Beryl Kanali

Rendered from MultipleAlignments.Rmd in Biostrings 2.81.2.
HDF5Array performanceUpdated 1 years ago

Hervé Pagès

Rendered from HDF5Array_performance.Rmd in HDF5Array 1.41.0.
A quick overview of the S4Arrays packageUpdated 1 years ago

Hervé Pagès

Rendered from S4Arrays_quick_overview.Rmd in S4Arrays 1.13.0.
The h5mread packageUpdated 1 years ago

Hervé Pagès

Rendered from h5mread.Rmd in h5mread 1.5.0.
SparseArray objectsUpdated 1 years ago

Hervé Pagès

Rendered from SparseArray_objects.Rmd in SparseArray 1.13.2.
Motivation and use of RtwobitlibUpdated 1 years ago

Hervé Pagès

Rendered from Rtwobitlib.Rmd in Rtwobitlib 0.3.10.
The UCSC.utils packageUpdated 1 years ago

Hervé Pagès

Rendered from UCSC.utils.Rmd in UCSC.utils 1.9.0.
Motivation and use of RhtslibUpdated 2 years ago

Nathaniel Hayden, Martin Morgan

Rendered from Rhtslib.Rmd in Rhtslib 3.9.0.
A quick introduction to the updateObject packageUpdated 2 years ago

Hervé Pagès

Rendered from updateObject.Rmd in updateObject 1.17.0.
An Introduction to the GenomicRanges PackageUpdated 2 years ago

Marc Carlson, Patrick Aboyoun, Hervé Pagès, and Martin Morgan

Rendered from GenomicRangesIntroduction.Rmd in GenomicRanges 1.65.0.
Working with large arrays in R (slides from July 2017) Updated 2 years ago

Hervé Pagès

Rendered from A-Working_with_large_arrays.Rnw in DelayedArray 0.39.3.
Implementing A DelayedArray BackendUpdated 2 years ago

Hervé Pagès

Rendered from B-Implementing_a_backend.Rmd in DelayedArray 0.39.3.
A DelayedArray / HDF5Array update (slides from April 2021) Updated 2 years ago

Hervé Pagès

Rendered from C-DelayedArray_HDF5Array_update.Rnw in DelayedArray 0.39.3.
Biostrings Quick OverviewUpdated 2 years ago

Hervé Pagès

Rendered from BiostringsQuickOverview.Rnw in Biostrings 2.81.2.
Pairwise Sequence AlignmentsUpdated 2 years ago

Hervé Pagès

Rendered from PairwiseAlignments.Rnw in Biostrings 2.81.2.
A quick introduction to the BSgenomeForge packageUpdated 2 years ago

Atuhurira Kirabo Kakopo, Hervé Pagès

Rendered from QuickBSgenomeForge.Rmd in BSgenomeForge 1.13.0.
An Overview of the S4Vectors packageUpdated 2 years ago

Patrick Aboyoun, Michael Lawrence, Hervé Pagès

Rendered from S4VectorsOverview.Rmd in S4Vectors 0.51.3.
Making TxDb ObjectsUpdated 2 years ago

Marc Carlson, Patrick Aboyoun, Hervé Pagès, Seth Falcon, Martin Morgan

Rendered from txdbmaker.Rmd in txdbmaker 1.9.0.
How to forge a BSgenome data packageUpdated 2 years ago

Hervé Pagès

Rendered from BSgenomeForge.Rnw in BSgenome 1.81.0.
Advanced BSgenomeForge usageUpdated 2 years ago

Hervé Pagès

Rendered from AdvancedBSgenomeForge.Rnw in BSgenomeForge 1.13.0.
Working with aligned nucleotides (WORK-IN-PROGRESS!)Updated 2 years ago

Hervé Pagès, Halimat C. Atanda

Rendered from WorkingWithAlignedNucleotides.Rmd in GenomicAlignments 1.49.0.
Pairwise Sequence AlignmentsUpdated 2 years ago

Hervé Pagès

Rendered from PairwiseAlignments.Rnw in pwalign 1.9.0.
Obtaining and Utilizing TxDb ObjectsUpdated 2 years ago

Marc Carlson, Patrick Aboyoun, Hervé Pagès, Seth Falcon, Martin Morgan

Rendered from GenomicFeatures.Rmd in GenomicFeatures 1.65.0.
Counting reads with summarizeOverlapsUpdated 2 years ago

Hervé Pagès

Rendered from summarizeOverlaps.Rnw in GenomicAlignments 1.49.0.
Using oligonucleotide microarray reporter sequence information for preprocessing and quality assessmentUpdated 2 years ago

Wolfgang Huber, Robert Gentleman

Rendered from matchprobes.Rmd in Biostrings 2.81.2.
Efficient genome searching with Biostrings and the BSgenome data packagesUpdated 2 years ago

Hervé Pagès

Rendered from GenomeSearching.Rnw in BSgenome 1.81.0.
SummarizedExperiment for Coordinating Experimental Assays, Samples, and Regions of InterestUpdated 2 years ago

Martin Morgan, Valerie Obenchain, Jim Hester, Hervé Pagès

Rendered from SummarizedExperiment.Rmd in SummarizedExperiment 1.43.0.
Submitting your organism to GenomeInfoDbUpdated 3 years ago

Sonali Arora, H. Khan

Rendered from Accept-organism-for-GenomeInfoDb.Rmd in GenomeInfoDb 1.49.1.
Ten Things You Didn't Know (slides from BioC 2016) Updated 3 years ago

Hervé Pagès

Rendered from Ten_things_slides.Rnw in GenomicRanges 1.65.0.
Rle Tips and TricksUpdated 3 years ago

Patrick Aboyoun, Beryl Kanali

Rendered from RleTricks.Rmd in S4Vectors 0.51.3.
A quick introduction to GRanges and GRangesList objects (slides) Updated 6 years ago

Hervé Pagès

Rendered from GRanges_and_GRangesList_slides.Rnw in GenomicRanges 1.65.0.
Extending the SummarizedExperiment classUpdated 8 years ago

Aaron Lun

Rendered from Extensions.Rmd in SummarizedExperiment 1.43.0.
An Introduction to the GenomicAlignments PackageUpdated 8 years ago

Hervé Pagès

Rendered from GenomicAlignmentsIntroduction.Rnw in GenomicAlignments 1.49.0.
An Overview of the IRanges packageUpdated 8 years ago

Hervé Pagès

Rendered from IRangesOverview.Rnw in IRanges 2.47.2.
Overlap encodingsUpdated 8 years ago

Hervé Pagès

Rendered from OverlapEncodings.Rnw in GenomicAlignments 1.49.0.
Extending GenomicRanges Updated 9 years ago

Hervé Pagès

Rendered from ExtendingGenomicRanges.Rnw in GenomicRanges 1.65.0.
A short presentation of the basic classes defined in Biostrings 2Updated 13 years ago

Hervé Pagès

Rendered from Biostrings2Classes.Rnw in Biostrings 2.81.2.