SparseArray objectsUpdated 7 days ago

Hervé Pagès

Rendered from SparseArray_objects.Rmd in SparseArray 1.5.42.
A quick introduction to the updateObject packageUpdated 1 months ago

Hervé Pagès

Rendered from updateObject.Rmd in updateObject 1.9.1.
An Introduction to the GenomicRanges PackageUpdated 4 months ago

Marc Carlson, Patrick Aboyoun, Hervé Pagès, and Martin Morgan

Rendered from GenomicRangesIntroduction.Rmd in GenomicRanges 1.57.1.
GenomicRanges HOWTOs Updated 4 months ago

Hervé Pagès

Rendered from GenomicRangesHOWTOs.Rnw in GenomicRanges 1.57.1.
MultipleAlignment ObjectsUpdated 4 months ago

Marc Carlson, Beryl Kanali

Rendered from MultipleAlignments.Rmd in Biostrings 2.73.2.
Working with large arrays in R (slides from July 2017) Updated 5 months ago

Hervé Pagès

Rendered from A-Working_with_large_arrays.Rnw in DelayedArray 0.31.14.
Implementing A DelayedArray BackendUpdated 5 months ago

Hervé Pagès

Rendered from B-Implementing_a_backend.Rmd in DelayedArray 0.31.14.
A DelayedArray / HDF5Array update (slides from April 2021) Updated 5 months ago

Hervé Pagès

Rendered from C-DelayedArray_HDF5Array_update.Rnw in DelayedArray 0.31.14.
Biostrings Quick OverviewUpdated 6 months ago

Hervé Pagès

Rendered from BiostringsQuickOverview.Rnw in Biostrings 2.73.2.
Pairwise Sequence AlignmentsUpdated 6 months ago

Hervé Pagès

Rendered from PairwiseAlignments.Rnw in Biostrings 2.73.2.
The UCSC.utils packageUpdated 6 months ago

Hervé Pagès

Rendered from UCSC.utils.Rmd in UCSC.utils 1.1.0.
A quick overview of the S4Arrays packageUpdated 6 months ago

Hervé Pagès

Rendered from S4Arrays_quick_overview.Rmd in S4Arrays 1.5.10.
A quick introduction to the BSgenomeForge packageUpdated 6 months ago

Atuhurira Kirabo Kakopo, Hervé Pagès

Rendered from QuickBSgenomeForge.Rmd in BSgenomeForge 1.5.1.
An Overview of the S4Vectors packageUpdated 6 months ago

Patrick Aboyoun, Michael Lawrence, Hervé Pagès

Rendered from S4VectorsOverview.Rmd in S4Vectors 0.43.2.
Making TxDb ObjectsUpdated 6 months ago

Marc Carlson, Patrick Aboyoun, Hervé Pagès, Seth Falcon, Martin Morgan

Rendered from txdbmaker.Rmd in txdbmaker 1.1.1.
How to forge a BSgenome data packageUpdated 6 months ago

Hervé Pagès

Rendered from BSgenomeForge.Rnw in BSgenome 1.73.1.
Advanced BSgenomeForge usageUpdated 6 months ago

Hervé Pagès

Rendered from AdvancedBSgenomeForge.Rnw in BSgenomeForge 1.5.1.
Working with aligned nucleotides (WORK-IN-PROGRESS!)Updated 6 months ago

Hervé Pagès, Halimat C. Atanda

Rendered from WorkingWithAlignedNucleotides.Rmd in GenomicAlignments 1.41.0.
Pairwise Sequence AlignmentsUpdated 7 months ago

Hervé Pagès

Rendered from PairwiseAlignments.Rnw in pwalign 1.1.0.
Obtaining and Utilizing TxDb ObjectsUpdated 7 months ago

Marc Carlson, Patrick Aboyoun, Hervé Pagès, Seth Falcon, Martin Morgan

Rendered from GenomicFeatures.Rmd in GenomicFeatures 1.57.1.
Counting reads with summarizeOverlapsUpdated 8 months ago

Hervé Pagès

Rendered from summarizeOverlaps.Rnw in GenomicAlignments 1.41.0.
Using oligonucleotide microarray reporter sequence information for preprocessing and quality assessmentUpdated 8 months ago

Wolfgang Huber, Robert Gentleman

Rendered from matchprobes.Rmd in Biostrings 2.73.2.
Efficient genome searching with Biostrings and the BSgenome data packagesUpdated 8 months ago

Hervé Pagès

Rendered from GenomeSearching.Rnw in BSgenome 1.73.1.
SummarizedExperiment for Coordinating Experimental Assays, Samples, and Regions of InterestUpdated 9 months ago

Martin Morgan, Valerie Obenchain, Jim Hester, Hervé Pagès

Rendered from SummarizedExperiment.Rmd in SummarizedExperiment 1.35.3.
Motivation and use of RhtslibUpdated 11 months ago

Nathaniel Hayden, Martin Morgan

Rendered from Rhtslib.Rmd in Rhtslib 3.1.0.
Submitting your organism to GenomeInfoDbUpdated 2 years ago

Sonali Arora, H. Khan

Rendered from Accept-organism-for-GenomeInfoDb.Rmd in GenomeInfoDb 1.41.2.
Ten Things You Didn't Know (slides from BioC 2016) Updated 2 years ago

Hervé Pagès

Rendered from Ten_things_slides.Rnw in GenomicRanges 1.57.1.
Rle Tips and TricksUpdated 2 years ago

Patrick Aboyoun, Beryl Kanali

Rendered from RleTricks.Rmd in S4Vectors 0.43.2.
A quick introduction to GRanges and GRangesList objects (slides) Updated 4 years ago

Hervé Pagès

Rendered from GRanges_and_GRangesList_slides.Rnw in GenomicRanges 1.57.1.
A quick overview of the S4 class systemUpdated 4 years ago

Hervé Pagès

Rendered from S4QuickOverview.Rnw in S4Vectors 0.43.2.
GenomeInfoDb: Introduction to GenomeInfoDbUpdated 4 years ago

Hervé Pagès

Rendered from GenomeInfoDb.Rnw in GenomeInfoDb 1.41.2.
Splicing graphs and RNA-seq dataUpdated 5 years ago

H. Pagès

Rendered from SplicingGraphs.Rnw in SplicingGraphs 1.45.0.
Extending the SummarizedExperiment classUpdated 6 years ago

Aaron Lun

Rendered from Extensions.Rmd in SummarizedExperiment 1.35.3.
An Introduction to the GenomicAlignments PackageUpdated 6 years ago

Hervé Pagès

Rendered from GenomicAlignmentsIntroduction.Rnw in GenomicAlignments 1.41.0.
An Overview of the IRanges packageUpdated 6 years ago

Hervé Pagès

Rendered from IRangesOverview.Rnw in IRanges 2.39.2.
Overlap encodingsUpdated 7 years ago

Hervé Pagès

Rendered from OverlapEncodings.Rnw in GenomicAlignments 1.41.0.
Extending GenomicRanges Updated 8 years ago

Hervé Pagès

Rendered from ExtendingGenomicRanges.Rnw in GenomicRanges 1.57.1.
A short presentation of the basic classes defined in Biostrings 2Updated 11 years ago

Hervé Pagès

Rendered from Biostrings2Classes.Rnw in Biostrings 2.73.2.